Ariadne-service and PyKnossos was used to reconstruct essentially all neurons in the olfactory bulb of a larval zebrafish. A detailed description of the dataset and software was recently published in Nature Scientific Data. The study (published in Nature Neuroscience) identified novel, rare cell types and revealed a specific topological organization of the […]

Dense EM-based reconstruction of the interglomerular projectome in the zebrafish ...


The goal of this challenge is to evaluate algorithms for automatic reconstruction of neurons and neuronal connectivity from serial section electron microscopy data. Ariadne-service was involved in generating the neurite segmentation for the challenge. Visit cremi.org for more information on the challenge.

MICCAI challenge on circuit reconstruction from electron microscopy images